Taxon Table | Genome Table
Genome Meta Information:
Prevotella
nigrescens
SCHI0028.S.5 (GCA_019375595.1)
| HOMD Genome-ID |
GCA_019375595.1
|
| HOMD Taxon-ID |
HMT-0693
|
| Species Name (in use by HOMD) |
Prevotella nigrescens
|
| Organism Name (as deposited) |
HMT-693 Prevotella nigrescens SCHI0028.S.5
|
| Strain or Isolate |
SCHI0028.S.5
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella nigrescens |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
203
|
| Contigs |
Number of Contigs: 108
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,147,434 (bp) |
| GC Percentage |
42.63
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/595/GCA_019375595.1_ASM1937559v1
|
| CDS |
2755
|
| Genes |
2816
|
| mRNA |
2816
|
| misc RNA |
7
|
| rRNA |
9
|
| tRNA |
44
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.13 %
|
| CheckM Completeness |
99.64 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1937559v1
|
| GenBank Assembly Accession |
GCA_019375595.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_019375595.1
[NCBI]
|
| BioSample |
SAMN19926184
[NCBI]
|
| BioProject |
PRJNA742126
[NCBI]
|
| Submitter |
University of the Sunshine Coast
|
| Submission Date |
2021-06-28T23:40:07.430
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAHXCG01
|
| NCBI TaxID |
28133
|
| Isolation Source |
sputum
|
| Geo Location |
Australia: Brisbane
|
