Taxon Table | Genome Table
Genome Meta Information:
Prevotella
histicola
SCHI0009.S.6 (GCA_019375895.1)
| HOMD Genome-ID |
GCA_019375895.1
|
| HOMD Taxon-ID |
HMT-0298
|
| Species Name (in use by HOMD) |
Prevotella histicola
|
| Organism Name (as deposited) |
HMT-298 Prevotella histicola SCHI0009.S.6
|
| Strain or Isolate |
SCHI0009.S.6
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella histicola |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
214
|
| Contigs |
Number of Contigs: 132
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,124,769 (bp) |
| GC Percentage |
41.06
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/375/895/GCA_019375895.1_ASM1937589v1
|
| CDS |
2564
|
| Genes |
2641
|
| mRNA |
2641
|
| misc RNA |
24
|
| rRNA |
3
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.4 %
|
| CheckM Completeness |
98.93 %
|
| CheckM Contamination |
0.12 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
Ambiguous
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1937589v1
|
| GenBank Assembly Accession |
GCA_019375895.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_019375895.1
[NCBI]
|
| BioSample |
SAMN19926169
[NCBI]
|
| BioProject |
PRJNA742126
[NCBI]
|
| Submitter |
University of the Sunshine Coast
|
| Submission Date |
2021-06-28T23:40:07.247
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAHXCV01
|
| NCBI TaxID |
470565
|
| Isolation Source |
sputum
|
| Geo Location |
Australia: Brisbane
|
