Genome Meta Information: Fusobacterium polymorphum THCT15E1 (GCA_019552045.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019552045.1 | ||
| HOMD Taxon-ID | HMT-0202 | ||
| Species Name (in use by HOMD) | Fusobacterium polymorphum | ||
| Organism Name (as deposited) | HMT-202 Fusobacterium polymorphum THCT15E1 | ||
| Strain or Isolate | THCT15E1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium polymorphum |
||
| Sequencing Technology | Illumina HiSeq; PacBio RSII | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,526,214 (bp) | ||
| GC Percentage | 26.87 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/552/045/GCA_019552045.1_ASM1955204v1 | ||
| CDS | 2374 | ||
| Genes | 2461 | ||
| mRNA | 2461 | ||
| misc RNA | 24 | ||
| rRNA | 15 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.95 % | ||
| CheckM Completeness | 99.68 % | ||
| CheckM Contamination | 0.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1955204v1 |
| GenBank Assembly Accession | GCA_019552045.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019552045.1 [NCBI] |
| BioSample | SAMN18042967 [NCBI] |
| BioProject | PRJNA704481 [NCBI] |
| Submitter | Shanghai Tenth Peoples Hospital, Tongji University School of Medicine |
| Submission Date | 2021-02-24T00:41:05.366 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 76857 |
| Isolation Source | Gut |
| Geo Location | China: Shanghai |
