Genome Meta Information: Staphylococcus caprae 78/2016 (GCA_019685475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019685475.1 | ||
| HOMD Taxon-ID | HMT-0567 | ||
| Species Name (in use by HOMD) | Staphylococcus caprae | ||
| Organism Name (as deposited) | HMT-567 Staphylococcus caprae 78/2016 | ||
| Strain or Isolate | 78/2016 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus caprae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 119 | ||
| Contigs |
|
||
| Total Sequence Length | 2,610,590 (bp) | ||
| GC Percentage | 33.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/685/475/GCA_019685475.1_ASM1968547v1 | ||
| CDS | 2444 | ||
| Genes | 2583 | ||
| mRNA | 2583 | ||
| misc RNA | 66 | ||
| rRNA | 11 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.67 % | ||
| CheckM Completeness | 99.77 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1968547v1 |
| GenBank Assembly Accession | GCA_019685475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019685475.1 [NCBI] |
| BioSample | SAMN14789684 [NCBI] |
| BioProject | PRJNA593524 [NCBI] |
| Submitter | LAPOA-Federal University of Paraiba (UFPB) |
| Submission Date | 2020-05-01T12:40:15.863 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABEMW01 |
| NCBI TaxID | 29380 |
| Isolation Source | goat milk |
| Geo Location | Brazil:Paraiba |
