Taxon Table | Genome Table
Genome Meta Information:
Staphylococcus
caprae
28/2016 (GCA_019685795.1)
| HOMD Genome-ID |
GCA_019685795.1
|
| HOMD Taxon-ID |
HMT-0567
|
| Species Name (in use by HOMD) |
Staphylococcus caprae
|
| Organism Name (as deposited) |
HMT-567 Staphylococcus caprae 28/2016
|
| Strain or Isolate |
28/2016
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;
s__Staphylococcus caprae |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
43
|
| Contigs |
Number of Contigs: 145
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,476,032 (bp) |
| GC Percentage |
33.59
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/685/795/GCA_019685795.1_ASM1968579v1
|
| CDS |
2290
|
| Genes |
2399
|
| mRNA |
2399
|
| misc RNA |
57
|
| rRNA |
3
|
| tRNA |
49
|
| tmRNA |
0
|
| ANI (Average Nucluotide Identity) |
98.61 %
|
| CheckM Completeness |
92.56 %
|
| CheckM Contamination |
2.44 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1968579v1
|
| GenBank Assembly Accession |
GCA_019685795.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_019685795.1
[NCBI]
|
| BioSample |
SAMN14783899
[NCBI]
|
| BioProject |
PRJNA593524
[NCBI]
|
| Submitter |
LAPOA-Federal University of Paraiba (UFPB)
|
| Submission Date |
2020-04-30T19:13:04.573
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JACEVE01
|
| NCBI TaxID |
29380
|
| Isolation Source |
goat milk
|
| Geo Location |
Brazil:Paraiba
|
