Genome Meta Information: Paenibacillus typhae I2-R2 (GCA_019748915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019748915.1 | ||
| HOMD Taxon-ID | HMT-0048 | ||
| Species Name (in use by HOMD) | Paenibacillus typhae | ||
| Organism Name (as deposited) | HMT-048 Paenibacillus typhae I2-R2 | ||
| Strain or Isolate | I2-R2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus; s__Paenibacillus typhae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 6,926,553 (bp) | ||
| GC Percentage | 51.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/748/915/GCA_019748915.1_ASM1974891v1 | ||
| CDS | 6024 | ||
| Genes | 6184 | ||
| mRNA | 6184 | ||
| misc RNA | 72 | ||
| rRNA | 5 | ||
| tRNA | 82 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.07 % | ||
| CheckM Completeness | 99.11 % | ||
| CheckM Contamination | 2.31 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1974891v1 |
| GenBank Assembly Accession | GCA_019748915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019748915.1 [NCBI] |
| BioSample | SAMN15705224 [NCBI] |
| BioProject | PRJNA644637 [NCBI] |
| Submitter | Jet Propulsion Laboratory, California Institute of Technology |
| Submission Date | 2020-08-03T12:30:10.933 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JACLCC01 |
| NCBI TaxID | 1174501 |
| Isolation Source | Air filter |
| Geo Location | USA |
