Genome Meta Information: Haemophilus haemolyticus 2019-19 (GCA_019973675.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019973675.1 | ||
| HOMD Taxon-ID | HMT-0851 | ||
| Species Name (in use by HOMD) | Haemophilus haemolyticus | ||
| Organism Name (as deposited) | HMT-851 Haemophilus haemolyticus 2019-19 | ||
| Strain or Isolate | 2019-19 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus haemolyticus |
||
| Sequencing Technology | GridION; DNB Seq-G400 | ||
| Genome Coverage | 1158 | ||
| Contigs |
|
||
| Total Sequence Length | 1,895,310 (bp) | ||
| GC Percentage | 38.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/973/675/GCA_019973675.1_ASM1997367v1 | ||
| CDS | 1763 | ||
| Genes | 1871 | ||
| mRNA | 1871 | ||
| misc RNA | 30 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.7 % | ||
| CheckM Completeness | 96.3 % | ||
| CheckM Contamination | 1.5 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1997367v1 |
| GenBank Assembly Accession | GCA_019973675.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019973675.1 [NCBI] |
| BioSample | SAMD00251501 [NCBI] |
| BioProject | PRJDB10631 [NCBI] |
| Submitter | Tokyo University of Pharmacy and Life Sciences |
| Submission Date | 2021-09-01T01:00:58.806 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 726 |
| Isolation Source | |
| Geo Location | not collected |
