Genome Meta Information: Limosilactobacillus reuteri SD-LRE2-IT (GCA_020023775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020023775.1 | ||
| HOMD Taxon-ID | HMT-0818 | ||
| Species Name (in use by HOMD) | Limosilactobacillus reuteri | ||
| Organism Name (as deposited) | HMT-818 Limosilactobacillus reuteri SD-LRE2-IT | ||
| Strain or Isolate | SD-LRE2-IT | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus reuteri |
||
| Sequencing Technology | Oxford Nanopore; Illumina | ||
| Genome Coverage | 156 | ||
| Contigs |
|
||
| Total Sequence Length | 2,313,802 (bp) | ||
| GC Percentage | 38.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/023/775/GCA_020023775.1_ASM2002377v1 | ||
| CDS | 2424 | ||
| Genes | 2601 | ||
| mRNA | 2601 | ||
| misc RNA | 84 | ||
| rRNA | 18 | ||
| tRNA | 74 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.03 % | ||
| CheckM Completeness | 93.18 % | ||
| CheckM Contamination | 1.31 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2002377v1 |
| GenBank Assembly Accession | GCA_020023775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020023775.1 [NCBI] |
| BioSample | SAMN19814906 [NCBI] |
| BioProject | PRJNA740036 [NCBI] |
| Submitter | SEED HEALTH INC |
| Submission Date | 2021-06-22T17:06:06.160 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1598 |
| Isolation Source | |
| Geo Location | Italy |
