Genome Meta Information: Lactobacillus crispatus Lc1226 (GCA_020042125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020042125.1 | ||
| HOMD Taxon-ID | HMT-0817 | ||
| Species Name (in use by HOMD) | Lactobacillus crispatus | ||
| Organism Name (as deposited) | HMT-817 Lactobacillus crispatus Lc1226 | ||
| Strain or Isolate | Lc1226 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus crispatus |
||
| Sequencing Technology | Illumina NextSeq, ONT MinION | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,526,154 (bp) | ||
| GC Percentage | 37.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/042/125/GCA_020042125.1_ASM2004212v1 | ||
| CDS | 2590 | ||
| Genes | 2725 | ||
| mRNA | 2725 | ||
| misc RNA | 49 | ||
| rRNA | 15 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.6 % | ||
| CheckM Completeness | 95.47 % | ||
| CheckM Contamination | 0.57 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2004212v1 |
| GenBank Assembly Accession | GCA_020042125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020042125.1 [NCBI] |
| BioSample | SAMN21367958 [NCBI] |
| BioProject | PRJNA761982 [NCBI] |
| Submitter | University of Texas at Dallas |
| Submission Date | 2021-09-09T11:44:06.027 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 47770 |
| Isolation Source | urine |
| Geo Location | USA: Dallas, Texas |
