Genome Meta Information: Corynebacterium jeikeium ICIS 99 (GCA_020161895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020161895.1 | ||
| HOMD Taxon-ID | HMT-0047 | ||
| Species Name (in use by HOMD) | Corynebacterium jeikeium | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum ICIS 99 | ||
| Strain or Isolate | ICIS 99 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium jeikeium_D |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 375 | ||
| Contigs |
|
||
| Total Sequence Length | 2,532,503 (bp) | ||
| GC Percentage | 58.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/161/895/GCA_020161895.1_ASM2016189v1 | ||
| CDS | 2194 | ||
| Genes | 2264 | ||
| mRNA | 2264 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.87 % | ||
| CheckM Completeness | 99.4 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2016189v1 |
| GenBank Assembly Accession | GCA_020161895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020161895.1 [NCBI] |
| BioSample | SAMN21545782 [NCBI] |
| BioProject | PRJNA339674 [NCBI] |
| Submitter | Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences |
| Submission Date | 2021-09-22T04:17:05.692 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAIUSU01 |
| NCBI TaxID | 43765 |
| Isolation Source | vagina |
| Geo Location | Russia: Orenburg |
