Genome Meta Information: Simonsiella muelleri DSM 2579 (GCA_020162275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020162275.1 | ||
| HOMD Taxon-ID | HMT-0683 | ||
| Species Name (in use by HOMD) | Simonsiella muelleri | ||
| Organism Name (as deposited) | HMT-683 Simonsiella muelleri DSM 2579 | ||
| Strain or Isolate | DSM 2579 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Simonsiella; s__Simonsiella muelleri |
||
| Sequencing Technology | Oxford Nanopore MinION; Illumina NovaSeq | ||
| Genome Coverage | 390 | ||
| Contigs |
|
||
| Total Sequence Length | 2,482,394 (bp) | ||
| GC Percentage | 41.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/162/275/GCA_020162275.1_ASM2016227v1 | ||
| CDS | 2390 | ||
| Genes | 2480 | ||
| mRNA | 2480 | ||
| misc RNA | 18 | ||
| rRNA | 15 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 96.71 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2016227v1 |
| GenBank Assembly Accession | GCA_020162275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020162275.1 [NCBI] |
| BioSample | SAMN17137620 [NCBI] |
| BioProject | PRJNA687218 [NCBI] |
| Submitter | University of Vienna |
| Submission Date | 2020-12-22T11:03:07.770 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 72 |
| Isolation Source | missing |
| Geo Location | Austria:Vienna |
