Genome Meta Information: Staphylococcus capitis SS160_SC_UNIFESP (GCA_020682835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020682835.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis SS160_SC_UNIFESP | ||
| Strain or Isolate | SS160_SC_UNIFESP | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 130.75 | ||
| Contigs |
|
||
| Total Sequence Length | 2,508,421 (bp) | ||
| GC Percentage | 32.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/682/835/GCA_020682835.1_ASM2068283v1 | ||
| CDS | 2374 | ||
| Genes | 2496 | ||
| mRNA | 2496 | ||
| misc RNA | 50 | ||
| rRNA | 9 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.82 % | ||
| CheckM Completeness | 99.51 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2068283v1 |
| GenBank Assembly Accession | GCA_020682835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020682835.1 [NCBI] |
| BioSample | SAMN19668998 [NCBI] |
| BioProject | PRJNA736948 [NCBI] |
| Submitter | Universidade Federal de Sao Paulo (UNIFESP) |
| Submission Date | 2021-06-11T11:21:05.453 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHMMT01 |
| NCBI TaxID | 29388 |
| Isolation Source | orthopedic device (ODRI) sonication fluid |
| Geo Location | Brazil: Sao Paulo |
