Genome Meta Information: Parabacteroides merdae FDAARGOS_1586 (GCA_020735605.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020735605.1 | ||
| HOMD Taxon-ID | HMT-0974 | ||
| Species Name (in use by HOMD) | Parabacteroides merdae | ||
| Organism Name (as deposited) | HMT-974 Parabacteroides merdae FDAARGOS_1586 | ||
| Strain or Isolate | FDAARGOS_1586 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides; s__Parabacteroides merdae |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 1765.81 | ||
| Contigs |
|
||
| Total Sequence Length | 4,375,800 (bp) | ||
| GC Percentage | 45.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/735/605/GCA_020735605.1_ASM2073560v1 | ||
| CDS | 3618 | ||
| Genes | 3725 | ||
| mRNA | 3725 | ||
| misc RNA | 14 | ||
| rRNA | 16 | ||
| tRNA | 77 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.84 % | ||
| CheckM Contamination | 3.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2073560v1 |
| GenBank Assembly Accession | GCA_020735605.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020735605.1 [NCBI] |
| BioSample | SAMN22091683 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2021-10-06T15:31:05.430 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 46503 |
| Isolation Source | missing |
| Geo Location | USA: Silver Spring |
