Genome Meta Information: Aggregatibacter actinomycetemcomitans CU1000N (GCA_020809485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020809485.1 | ||
| HOMD Taxon-ID | HMT-0531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans CU1000N | ||
| Strain or Isolate | CU1000N | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 892.023 | ||
| Contigs |
|
||
| Total Sequence Length | 2,331,529 (bp) | ||
| GC Percentage | 44.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/809/485/GCA_020809485.1_ASM2080948v1 | ||
| CDS | 2205 | ||
| Genes | 2409 | ||
| mRNA | 2409 | ||
| misc RNA | 130 | ||
| rRNA | 19 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.72 % | ||
| CheckM Completeness | 97.72 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2080948v1 |
| GenBank Assembly Accession | GCA_020809485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_020809485.1 [NCBI] |
| BioSample | SAMN19594576 [NCBI] |
| BioProject | PRJNA735719 [NCBI] |
| Submitter | Rutgers School of Dental Medicine |
| Submission Date | 2021-06-07T12:45:09.813 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 714 |
| Isolation Source | |
| Geo Location | USA: New York City |
