Genome Meta Information: Nanosynbacter sp. HMT-352 OHS0013 (GCA_020912025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_020912025.1 | ||
| HOMD Taxon-ID | HMT-0352 | ||
| Species Name (in use by HOMD) | Nanosynbacter sp. HMT-352 | ||
| Organism Name (as deposited) | HMT-352 Nanosynbacter sp. HMT-352 OHS0013 | ||
| Strain or Isolate | OHS0013 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter; s__Nanosynbacter sp900556355 |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 13.44 | ||
| Contigs |
|
||
| Total Sequence Length | 760,861 (bp) | ||
| GC Percentage | 43.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/912/025/GCA_020912025.1_ASM2091202v1 | ||
| CDS | 766 | ||
| Genes | 818 | ||
| mRNA | 818 | ||
| misc RNA | 6 | ||
| rRNA | 5 | ||
| tRNA | 41 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 87.93 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2091202v1 |
| GenBank Assembly Accession | GCA_020912025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN18522312 [NCBI] |
| BioProject | PRJNA717815 [NCBI] |
| Submitter | Amazonas State University |
| Submission Date | 2021-03-28T20:49:07.070 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGTWK01 |
| NCBI TaxID | 2725945 |
| Isolation Source | oral cavity |
| Geo Location | Brazil: Manaus, Amazonas |
