Genome Meta Information: Neisseria gonorrhoeae 10574 (GCA_021193625.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_021193625.2 | ||
| HOMD Taxon-ID | HMT-0621 | ||
| Species Name (in use by HOMD) | Neisseria gonorrhoeae | ||
| Organism Name (as deposited) | HMT-621 Neisseria gonorrhoeae 10574 | ||
| Strain or Isolate | 10574 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria gonorrhoeae |
||
| Sequencing Technology | Illumina MiniSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 208 | ||
| Contigs |
|
||
| Total Sequence Length | 2,218,166 (bp) | ||
| GC Percentage | 52.43 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/193/625/GCA_021193625.2_ASM2119362v2 | ||
| CDS | 2216 | ||
| Genes | 2306 | ||
| mRNA | 2306 | ||
| misc RNA | 21 | ||
| rRNA | 12 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.56 % | ||
| CheckM Completeness | 99.03 % | ||
| CheckM Contamination | 0.19 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2119362v2 |
| GenBank Assembly Accession | GCA_021193625.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_021193625.2 [NCBI] |
| BioSample | SAMN22600672 [NCBI] |
| BioProject | PRJNA768989 [NCBI] |
| Submitter | Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, |
| Submission Date | 2021-10-27T08:47:04.043 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 485 |
| Isolation Source | urethal swab |
| Geo Location | Russia: Kaluga |
