Genome Meta Information: Limosilactobacillus reuteri VHProbi M07 (GCA_021228055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_021228055.1 | ||
| HOMD Taxon-ID | HMT-0818 | ||
| Species Name (in use by HOMD) | Limosilactobacillus reuteri | ||
| Organism Name (as deposited) | HMT-818 Limosilactobacillus reuteri VHProbi M07 | ||
| Strain or Isolate | VHProbi M07 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus reuteri |
||
| Sequencing Technology | Illumina HiSeq; PacBio RS | ||
| Genome Coverage | 1170.69 | ||
| Contigs |
|
||
| Total Sequence Length | 2,041,530 (bp) | ||
| GC Percentage | 38.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/228/055/GCA_021228055.1_ASM2122805v1 | ||
| CDS | 2012 | ||
| Genes | 2171 | ||
| mRNA | 2171 | ||
| misc RNA | 71 | ||
| rRNA | 18 | ||
| tRNA | 69 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 0.65 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2122805v1 |
| GenBank Assembly Accession | GCA_021228055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_021228055.1 [NCBI] |
| BioSample | SAMN23525688 [NCBI] |
| BioProject | PRJNA785010 [NCBI] |
| Submitter | Nutrition &Health Technology Center |
| Submission Date | 2021-11-30T19:51:03.087 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1598 |
| Isolation Source | Breast milk |
| Geo Location | China |
