Genome Meta Information: Staphylococcus epidermidis CBPA-ST-11003 (GCA_021398325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_021398325.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis CBPA-ST-11003 | ||
| Strain or Isolate | CBPA-ST-11003 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 475 | ||
| Contigs |
|
||
| Total Sequence Length | 2,591,267 (bp) | ||
| GC Percentage | 32.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/398/325/GCA_021398325.1_ASM2139832v1 | ||
| CDS | 2405 | ||
| Genes | 2560 | ||
| mRNA | 2560 | ||
| misc RNA | 76 | ||
| rRNA | 19 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.18 % | ||
| CheckM Completeness | 98.97 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2139832v1 |
| GenBank Assembly Accession | GCA_021398325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_021398325.1 [NCBI] |
| BioSample | SAMN17983071 [NCBI] |
| BioProject | PRJNA715211 [NCBI] |
| Submitter | Health Canada |
| Submission Date | 2021-02-19T08:00:07.363 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | isolated from contaminated platelets |
| Geo Location | Canada |
