Taxon Table | Genome Table
Genome Meta Information:
Porphyromonas
gingivalis
Kyudai-3 (GCA_021406725.1)
| HOMD Genome-ID |
GCA_021406725.1
|
| HOMD Taxon-ID |
HMT-0619
|
| Species Name (in use by HOMD) |
Porphyromonas gingivalis
|
| Organism Name (as deposited) |
HMT-619 Porphyromonas gingivalis Kyudai-3
|
| Strain or Isolate |
Kyudai-3
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;
s__Porphyromonas gingivalis |
| Sequencing Technology |
Illumina NovaSeq
|
| Genome Coverage |
708
|
| Contigs |
Number of Contigs: 116
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,424,555 (bp) |
| GC Percentage |
48.56
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/406/725/GCA_021406725.1_ASM2140672v1
|
| CDS |
2091
|
| Genes |
2157
|
| mRNA |
2157
|
| misc RNA |
11
|
| rRNA |
7
|
| tRNA |
47
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.5 %
|
| CheckM Completeness |
98.08 %
|
| CheckM Contamination |
1.02 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
3 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM2140672v1
|
| GenBank Assembly Accession |
GCA_021406725.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_021406725.1
[NCBI]
|
| BioSample |
SAMN17134856
[NCBI]
|
| BioProject |
PRJNA687123
[NCBI]
|
| Submitter |
Health Sciences University of Hokkaido
|
| Submission Date |
2020-12-22T02:53:09.237
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAEMBO01
|
| NCBI TaxID |
837
|
| Isolation Source |
|
| Geo Location |
Japan
|
