Genome Meta Information: Streptococcus oralis SOT (GCA_021497945.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_021497945.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus SOT | ||
| Strain or Isolate | SOT | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_BR |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 120 | ||
| Contigs |
|
||
| Total Sequence Length | 1,944,085 (bp) | ||
| GC Percentage | 41.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/497/945/GCA_021497945.1_ASM2149794v1 | ||
| CDS | 1845 | ||
| Genes | 1957 | ||
| mRNA | 1957 | ||
| misc RNA | 38 | ||
| rRNA | 12 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.63 % | ||
| CheckM Completeness | 97.18 % | ||
| CheckM Contamination | 0.59 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2149794v1 |
| GenBank Assembly Accession | GCA_021497945.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_021497945.1 [NCBI] |
| BioSample | SAMN13440952 [NCBI] |
| BioProject | PRJNA592835 [NCBI] |
| Submitter | Shandong University |
| Submission Date | 2019-12-01T23:31:03.687 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1303 |
| Isolation Source | human oral cavity |
| Geo Location | China: Shandong |
