Genome Meta Information: Levilactobacillus brevis YSJ3 (GCA_022350025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022350025.1 | ||
| HOMD Taxon-ID | HMT-0558 | ||
| Species Name (in use by HOMD) | Levilactobacillus brevis | ||
| Organism Name (as deposited) | HMT-558 Levilactobacillus brevis YSJ3 | ||
| Strain or Isolate | YSJ3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus; s__Levilactobacillus brevis |
||
| Sequencing Technology | Illumina HiSeq; PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,546,891 (bp) | ||
| GC Percentage | 45.76 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/350/025/GCA_022350025.1_ASM2235002v1 | ||
| CDS | 2508 | ||
| Genes | 2621 | ||
| mRNA | 2621 | ||
| misc RNA | 32 | ||
| rRNA | 15 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.66 % | ||
| CheckM Completeness | 99.5 % | ||
| CheckM Contamination | 4.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2235002v1 |
| GenBank Assembly Accession | GCA_022350025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_022350025.1 [NCBI] |
| BioSample | SAMN25819437 [NCBI] |
| BioProject | PRJNA804971 [NCBI] |
| Submitter | Zhejiang Academy of Agricultural Sciences |
| Submission Date | 2022-02-09T21:47:02.926 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1580 |
| Isolation Source | Yeshanjun pickle |
| Geo Location | China:Jingning |
