Genome Meta Information: Bifidobacterium subtile UW_MP_BIF14_1 (GCA_022641135.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022641135.1 | ||
| HOMD Taxon-ID | HMT-0890 | ||
| Species Name (in use by HOMD) | Bifidobacterium subtile | ||
| Organism Name (as deposited) | HMT-890 Bifidobacterium subtile UW_MP_BIF14_1 | ||
| Strain or Isolate | UW_MP_BIF14_1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium subtile |
||
| Sequencing Technology | Illumina NovaSeq S4 | ||
| Genome Coverage | 154 | ||
| Contigs |
|
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| Total Sequence Length | 2,186,116 (bp) | ||
| GC Percentage | 61.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/641/135/GCA_022641135.1_ASM2264113v1 | ||
| CDS | 1748 | ||
| Genes | 1803 | ||
| mRNA | 1803 | ||
| misc RNA | 16 | ||
| rRNA | 0 | ||
| tRNA | 39 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 98.95 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2264113v1 |
| GenBank Assembly Accession | GCA_022641135.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN22412161 [NCBI] |
| BioProject | PRJNA768551 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2021-10-19T15:25:54.387 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JALCDA01 |
| NCBI TaxID | 77635 |
| Isolation Source | anaerobic bioreactor effluent |
| Geo Location | USA: Madison, WI |
