Genome Meta Information: Staphylococcus epidermidis C100 (GCA_022832915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022832915.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis C100 | ||
| Strain or Isolate | C100 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | Illumina NextSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 1841 | ||
| Contigs |
|
||
| Total Sequence Length | 2,541,647 (bp) | ||
| GC Percentage | 32.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/832/915/GCA_022832915.1_ASM2283291v1 | ||
| CDS | 2316 | ||
| Genes | 2478 | ||
| mRNA | 2478 | ||
| misc RNA | 82 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.55 % | ||
| CheckM Completeness | 99.22 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2283291v1 |
| GenBank Assembly Accession | GCA_022832915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_022832915.1 [NCBI] |
| BioSample | SAMN27161489 [NCBI] |
| BioProject | PRJNA821968 [NCBI] |
| Submitter | Curtin University |
| Submission Date | 2022-03-31T22:11:05.614 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | pertoneal cavity |
| Geo Location | Australia: Perth |
