Genome Meta Information: Parabacteroides merdae CE91-St3 (GCA_022835275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022835275.1 | ||
| HOMD Taxon-ID | HMT-0974 | ||
| Species Name (in use by HOMD) | Parabacteroides merdae | ||
| Organism Name (as deposited) | HMT-974 Parabacteroides merdae CE91-St3 | ||
| Strain or Isolate | CE91-St3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides; s__Parabacteroides merdae |
||
| Sequencing Technology | Illumina MiSeq; PacBio Sequel | ||
| Genome Coverage | 291 | ||
| Contigs |
|
||
| Total Sequence Length | 5,199,758 (bp) | ||
| GC Percentage | 45.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/835/275/GCA_022835275.1_ASM2283527v1 | ||
| CDS | 4488 | ||
| Genes | 4608 | ||
| mRNA | 4608 | ||
| misc RNA | 21 | ||
| rRNA | 18 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.89 % | ||
| CheckM Completeness | 97.84 % | ||
| CheckM Contamination | 8.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2283527v1 |
| GenBank Assembly Accession | GCA_022835275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_022835275.1 [NCBI] |
| BioSample | SAMD00389890 [NCBI] |
| BioProject | PRJDB11902 [NCBI] |
| Submitter | Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN |
| Submission Date | 2021-07-08T13:06:53.247 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | BQNZ01 |
| NCBI TaxID | 46503 |
| Isolation Source | |
| Geo Location | Japan |
