Genome Meta Information: Pyramidobacter piscolens CE91-St28 (GCA_022846135.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022846135.1 | ||
| HOMD Taxon-ID | HMT-0357 | ||
| Species Name (in use by HOMD) | Pyramidobacter piscolens | ||
| Organism Name (as deposited) | HMT-357 Pyramidobacter piscolens CE91-St28 | ||
| Strain or Isolate | CE91-St28 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter; s__Pyramidobacter piscolens |
||
| Sequencing Technology | Illumina MiSeq; PacBio Sequel | ||
| Genome Coverage | 436 | ||
| Contigs |
|
||
| Total Sequence Length | 2,686,623 (bp) | ||
| GC Percentage | 59.69 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/846/135/GCA_022846135.1_ASM2284613v1 | ||
| CDS | 2464 | ||
| Genes | 2552 | ||
| mRNA | 2552 | ||
| misc RNA | 20 | ||
| rRNA | 10 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.81 % | ||
| CheckM Completeness | 99.79 % | ||
| CheckM Contamination | 0.83 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2284613v1 |
| GenBank Assembly Accession | GCA_022846135.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_022846135.1 [NCBI] |
| BioSample | SAMD00389908 [NCBI] |
| BioProject | PRJDB11902 [NCBI] |
| Submitter | Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN |
| Submission Date | 2021-07-08T13:06:53.650 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 638849 |
| Isolation Source | |
| Geo Location | Japan |
