Genome Meta Information: Staphylococcus epidermidis SKN25lux (GCA_022919195.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_022919195.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis SKN25lux | ||
| Strain or Isolate | SKN25lux | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | PacBio RS | ||
| Genome Coverage | 450 | ||
| Contigs |
|
||
| Total Sequence Length | 2,539,082 (bp) | ||
| GC Percentage | 32.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/919/195/GCA_022919195.1_ASM2291919v1 | ||
| CDS | 2334 | ||
| Genes | 2496 | ||
| mRNA | 2496 | ||
| misc RNA | 82 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.65 % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2291919v1 |
| GenBank Assembly Accession | GCA_022919195.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_022919195.1 [NCBI] |
| BioSample | SAMN27305141 [NCBI] |
| BioProject | PRJNA823545 [NCBI] |
| Submitter | Inselspital |
| Submission Date | 2022-04-05T08:14:05.180 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | Bloodstream |
| Geo Location | Switzerland: Bern |
