Genome Meta Information: Prevotella intermedia EYE_26 (GCA_023148185.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023148185.1 | ||
| HOMD Taxon-ID | HMT-0643 | ||
| Species Name (in use by HOMD) | Prevotella intermedia | ||
| Organism Name (as deposited) | HMT-643 Prevotella intermedia EYE_26 | ||
| Strain or Isolate | EYE_26 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella intermedia |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,635,238 (bp) | ||
| GC Percentage | 43.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/148/185/GCA_023148185.1_ASM2314818v1 | ||
| CDS | 2239 | ||
| Genes | 2303 | ||
| mRNA | 2303 | ||
| misc RNA | 10 | ||
| rRNA | 7 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.52 % | ||
| CheckM Completeness | 89.88 % | ||
| CheckM Contamination | 5.88 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2314818v1 |
| GenBank Assembly Accession | GCA_023148185.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023148185.1 [NCBI] |
| BioSample | SAMN19899804 [NCBI] |
| BioProject | PRJNA741708 [NCBI] |
| Submitter | China CDC |
| Submission Date | 2021-06-27T03:54:39.927 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHXOD01 |
| NCBI TaxID | 28131 |
| Isolation Source | ocular surface of healthy person |
| Geo Location | China:Shanxi |
