Genome Meta Information: Bradyrhizobium elkanii USDA 76 (GCA_023278185.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023278185.1 | ||
| HOMD Taxon-ID | HMT-0597 | ||
| Species Name (in use by HOMD) | Bradyrhizobium elkanii | ||
| Organism Name (as deposited) | HMT-597 Bradyrhizobium elkanii USDA 76 | ||
| Strain or Isolate | USDA 76 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium; s__Bradyrhizobium elkanii |
||
| Sequencing Technology | PacBio RS | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 9,518,205 (bp) | ||
| GC Percentage | 63.71 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/278/185/GCA_023278185.1_ASM2327818v1 | ||
| CDS | 8963 | ||
| Genes | 9080 | ||
| mRNA | 9080 | ||
| misc RNA | 61 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.4 % | ||
| CheckM Contamination | 0.42 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2327818v1 |
| GenBank Assembly Accession | GCA_023278185.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023278185.1 [NCBI] |
| BioSample | SAMN17108307 [NCBI] |
| BioProject | PRJNA686128 [NCBI] |
| Submitter | VEIL Bradyrhizobium group |
| Submission Date | 2020-12-17T22:35:11.066 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 398525 |
| Isolation Source | root nodules |
| Geo Location | USA: California |
