Genome Meta Information: Rothia mucilaginosa JCVI-JB-Rm27 (GCA_023303065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023303065.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 JCVI-JB-Rm27 | ||
| Strain or Isolate | JCVI-JB-Rm27 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa |
||
| Sequencing Technology | Oxford Nanopore GridION; Illumina MiSeq | ||
| Genome Coverage | 256 | ||
| Contigs |
|
||
| Total Sequence Length | 2,273,720 (bp) | ||
| GC Percentage | 59.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/303/065/GCA_023303065.1_ASM2330306v1 | ||
| CDS | 1837 | ||
| Genes | 1909 | ||
| mRNA | 1909 | ||
| misc RNA | 12 | ||
| rRNA | 10 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.47 % | ||
| CheckM Completeness | 95.2 % | ||
| CheckM Contamination | 1.25 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2330306v1 |
| GenBank Assembly Accession | GCA_023303065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023303065.1 [NCBI] |
| BioSample | SAMN28033083 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2022-05-02T12:38:06.203 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 43675 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
