Genome Meta Information: Streptococcus oralis HP01 (GCA_023611505.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023611505.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus HP01 | ||
| Strain or Isolate | HP01 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_CT |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 420 | ||
| Contigs |
|
||
| Total Sequence Length | 2,063,152 (bp) | ||
| GC Percentage | 40.95 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/611/505/GCA_023611505.1_ASM2361150v1 | ||
| CDS | 1987 | ||
| Genes | 2116 | ||
| mRNA | 2116 | ||
| misc RNA | 55 | ||
| rRNA | 12 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.65 % | ||
| CheckM Completeness | 98.45 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2361150v1 |
| GenBank Assembly Accession | GCA_023611505.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023611505.1 [NCBI] |
| BioSample | SAMN28592655 [NCBI] |
| BioProject | PRJNA841414 [NCBI] |
| Submitter | Daegu Catholic University School of Medicine |
| Submission Date | 2022-05-23T03:10:06.323 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1303 |
| Isolation Source | saliva |
| Geo Location | South Korea: Daegu |
