Genome Meta Information: Peptoniphilus harei SAHP1 (GCA_023614525.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023614525.1 | ||
| HOMD Taxon-ID | HMT-0109 | ||
| Species Name (in use by HOMD) | Peptoniphilus harei | ||
| Organism Name (as deposited) | HMT-109 Peptoniphilus harei SAHP1 | ||
| Strain or Isolate | SAHP1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A; s__Peptoniphilus_A genitalis |
||
| Sequencing Technology | Oxford Nanopore PromethION | ||
| Genome Coverage | 1880.99 | ||
| Contigs |
|
||
| Total Sequence Length | 1,917,962 (bp) | ||
| GC Percentage | 34.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/614/525/GCA_023614525.1_ASM2361452v1 | ||
| CDS | 1799 | ||
| Genes | 1889 | ||
| mRNA | 1889 | ||
| misc RNA | 38 | ||
| rRNA | 9 | ||
| tRNA | 42 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.62 % | ||
| CheckM Completeness | 98.7 % | ||
| CheckM Contamination | 1.44 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2361452v1 |
| GenBank Assembly Accession | GCA_023614525.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023614525.1 [NCBI] |
| BioSample | SAMN28626158 [NCBI] |
| BioProject | PRJNA841842 [NCBI] |
| Submitter | The Seventh Affiliated Hospital, Sun Yat-sen University |
| Submission Date | 2022-05-24T08:36:04.813 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 3036303 |
| Isolation Source | Bloodstream |
| Geo Location | China: Shenzhen |
