Genome Meta Information: Neisseria subflava HP0001 (GCA_023635105.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023635105.1 | ||
| HOMD Taxon-ID | HMT-0476 | ||
| Species Name (in use by HOMD) | Neisseria subflava | ||
| Organism Name (as deposited) | HMT-476 Neisseria subflava HP0001 | ||
| Strain or Isolate | HP0001 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria subflava |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 328.68 | ||
| Contigs |
|
||
| Total Sequence Length | 2,457,335 (bp) | ||
| GC Percentage | 49.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/635/105/GCA_023635105.1_ASM2363510v1 | ||
| CDS | 2426 | ||
| Genes | 2562 | ||
| mRNA | 2562 | ||
| misc RNA | 64 | ||
| rRNA | 12 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.6 % | ||
| CheckM Completeness | 96.4 % | ||
| CheckM Contamination | 0.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2363510v1 |
| GenBank Assembly Accession | GCA_023635105.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023635105.1 [NCBI] |
| BioSample | SAMN18320763 [NCBI] |
| BioProject | PRJNA714914 [NCBI] |
| Submitter | Nanyang Technological University |
| Submission Date | 2021-03-16T13:34:03.990 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGEON01 |
| NCBI TaxID | 28449 |
| Isolation Source | |
| Geo Location | Singapore: Singapore |
