Genome Meta Information: Phocaeicola massiliensis MB20-133 (GCA_023668475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023668475.1 | ||
| HOMD Taxon-ID | HMT-0976 | ||
| Species Name (in use by HOMD) | Phocaeicola massiliensis | ||
| Organism Name (as deposited) | HMT-976 Phocaeicola massiliensis MB20-133 | ||
| Strain or Isolate | MB20-133 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola massiliensis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 2.33604e+07 | ||
| Contigs |
|
||
| Total Sequence Length | 4,740,807 (bp) | ||
| GC Percentage | 42.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/668/475/GCA_023668475.1_ASM2366847v1 | ||
| CDS | 4102 | ||
| Genes | 4178 | ||
| mRNA | 4178 | ||
| misc RNA | 11 | ||
| rRNA | 8 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.14 % | ||
| CheckM Completeness | 83.66 % | ||
| CheckM Contamination | 7.38 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2366847v1 |
| GenBank Assembly Accession | GCA_023668475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023668475.1 [NCBI] |
| BioSample | SAMN28703703 [NCBI] |
| BioProject | PRJNA843113 [NCBI] |
| Submitter | National laboratory for health, environment and food |
| Submission Date | 2022-05-27T17:06:04.900 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAMOXA01 |
| NCBI TaxID | 204516 |
| Isolation Source | feces |
| Geo Location | Slovenia |
