Genome Meta Information: Schaalia sp. HMT-180 11953 (GCA_023716965.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023716965.1 | ||
| HOMD Taxon-ID | HMT-0180 | ||
| Species Name (in use by HOMD) | Schaalia sp. HMT-180 | ||
| Organism Name (as deposited) | HMT-180 Schaalia sp. HMT-180 11953 | ||
| Strain or Isolate | 11953 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia sp000185285 |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,331,528 (bp) | ||
| GC Percentage | 66.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/716/965/GCA_023716965.1_ASM2371696v1 | ||
| CDS | 1968 | ||
| Genes | 2032 | ||
| mRNA | 2032 | ||
| misc RNA | 10 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 83.64 % | ||
| CheckM Completeness | 99.53 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2371696v1 |
| GenBank Assembly Accession | GCA_023716965.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023716965.1 [NCBI] |
| BioSample | SAMN28871634 [NCBI] |
| BioProject | PRJNA846272 [NCBI] |
| Submitter | Ningbo First Hospital |
| Submission Date | 2022-06-06T11:29:04.380 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAMQRY01 |
| NCBI TaxID | 52773 |
| Isolation Source | bronchoalveolar lavage fluid |
| Geo Location | China: Ningbo |
