Genome Meta Information: Lactiplantibacillus pentosus 9D3 (GCA_023823145.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_023823145.1 | ||
| HOMD Taxon-ID | HMT-0883 | ||
| Species Name (in use by HOMD) | Lactiplantibacillus pentosus | ||
| Organism Name (as deposited) | HMT-883 Lactiplantibacillus pentosus 9D3 | ||
| Strain or Isolate | 9D3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus; s__Lactiplantibacillus pentosus |
||
| Sequencing Technology | PacBio RSII; Illumina NextSeq | ||
| Genome Coverage | 246.81 | ||
| Contigs |
|
||
| Total Sequence Length | 3,812,583 (bp) | ||
| GC Percentage | 46.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/823/145/GCA_023823145.1_ASM2382314v1 | ||
| CDS | 3427 | ||
| Genes | 3569 | ||
| mRNA | 3569 | ||
| misc RNA | 48 | ||
| rRNA | 16 | ||
| tRNA | 77 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.95 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 2.21 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2382314v1 |
| GenBank Assembly Accession | GCA_023823145.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_023823145.1 [NCBI] |
| BioSample | SAMN19769714 [NCBI] |
| BioProject | PRJNA739022 [NCBI] |
| Submitter | Mahidol University |
| Submission Date | 2021-06-18T01:07:09.170 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1589 |
| Isolation Source | |
| Geo Location | Thailand |
