Genome Meta Information: Parabacteroides merdae NB2A-29-D6 (GCA_024125345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024125345.1 | ||
| HOMD Taxon-ID | HMT-0974 | ||
| Species Name (in use by HOMD) | Parabacteroides merdae | ||
| Organism Name (as deposited) | HMT-974 Parabacteroides merdae NB2A-29-D6 | ||
| Strain or Isolate | NB2A-29-D6 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides; s__Parabacteroides merdae |
||
| Sequencing Technology | Illumina MiSeq; NanoPore GridION | ||
| Genome Coverage | 284 | ||
| Contigs |
|
||
| Total Sequence Length | 4,718,822 (bp) | ||
| GC Percentage | 45.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/125/345/GCA_024125345.1_ASM2412534v1 | ||
| CDS | 3949 | ||
| Genes | 4069 | ||
| mRNA | 4069 | ||
| misc RNA | 20 | ||
| rRNA | 19 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.83 % | ||
| CheckM Completeness | 96.67 % | ||
| CheckM Contamination | 4.92 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2412534v1 |
| GenBank Assembly Accession | GCA_024125345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024125345.1 [NCBI] |
| BioSample | SAMN28102043 [NCBI] |
| BioProject | PRJNA835435 [NCBI] |
| Submitter | MET-4 |
| Submission Date | 2022-05-05T12:30:19.640 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAMXVJ01 |
| NCBI TaxID | 46503 |
| Isolation Source | feces |
| Geo Location | not applicable |
