Genome Meta Information: Pseudomonas otitidis SLBN-103 (GCA_024170065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024170065.1 | ||
| HOMD Taxon-ID | HMT-0834 | ||
| Species Name (in use by HOMD) | Pseudomonas otitidis | ||
| Organism Name (as deposited) | HMT-834 Pseudomonas otitidis SLBN-103 | ||
| Strain or Isolate | SLBN-103 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas; s__Metapseudomonas otitidis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 154 | ||
| Contigs |
|
||
| Total Sequence Length | 6,298,479 (bp) | ||
| GC Percentage | 67.19 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/170/065/GCA_024170065.1_ASM2417006v1 | ||
| CDS | 5698 | ||
| Genes | 5872 | ||
| mRNA | 5872 | ||
| misc RNA | 85 | ||
| rRNA | 12 | ||
| tRNA | 76 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.28 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.77 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2417006v1 |
| GenBank Assembly Accession | GCA_024170065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024170065.1 [NCBI] |
| BioSample | SAMN18243029 [NCBI] |
| BioProject | PRJNA708489 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2021-03-10T12:24:45.420 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JALJXM01 |
| NCBI TaxID | 319939 |
| Isolation Source | missing |
| Geo Location | USA: California |
