Genome Meta Information: Neisseria subflava HP0048 (GCA_024205685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024205685.1 | ||
| HOMD Taxon-ID | HMT-0476 | ||
| Species Name (in use by HOMD) | Neisseria subflava | ||
| Organism Name (as deposited) | HMT-476 Neisseria subflava HP0048 | ||
| Strain or Isolate | HP0048 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria sp000186165 |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 222.32 | ||
| Contigs |
|
||
| Total Sequence Length | 2,243,952 (bp) | ||
| GC Percentage | 49.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/205/685/GCA_024205685.1_ASM2420568v1 | ||
| CDS | 2052 | ||
| Genes | 2168 | ||
| mRNA | 2168 | ||
| misc RNA | 43 | ||
| rRNA | 12 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.88 % | ||
| CheckM Completeness | 99.17 % | ||
| CheckM Contamination | 1.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2420568v1 |
| GenBank Assembly Accession | GCA_024205685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024205685.1 [NCBI] |
| BioSample | SAMN18320771 [NCBI] |
| BioProject | PRJNA714914 [NCBI] |
| Submitter | Nanyang Technological University |
| Submission Date | 2021-03-16T13:34:04.097 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28449 |
| Isolation Source | |
| Geo Location | Singapore: Singapore |
