Genome Meta Information: Prevotella copri HF2100 (GCA_024330435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024330435.1 | ||
| HOMD Taxon-ID | HMT-0979 | ||
| Species Name (in use by HOMD) | Prevotella copri | ||
| Organism Name (as deposited) | HMT-979 Prevotella copri HF2100 | ||
| Strain or Isolate | HF2100 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella copri_A |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 270 | ||
| Contigs |
|
||
| Total Sequence Length | 3,597,500 (bp) | ||
| GC Percentage | 45.76 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/330/435/GCA_024330435.1_ASM2433043v1 | ||
| CDS | 2959 | ||
| Genes | 3052 | ||
| mRNA | 3052 | ||
| misc RNA | 15 | ||
| rRNA | 8 | ||
| tRNA | 69 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.84 % | ||
| CheckM Completeness | 98.38 % | ||
| CheckM Contamination | 0.5 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2433043v1 |
| GenBank Assembly Accession | GCA_024330435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024330435.1 [NCBI] |
| BioSample | SAMN29625261 [NCBI] |
| BioProject | PRJNA792012 [NCBI] |
| Submitter | China CDC |
| Submission Date | 2022-07-10T08:41:05.516 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JANDWY01 |
| NCBI TaxID | 165179 |
| Isolation Source | feces |
| Geo Location | China: Beijing |
