Genome Meta Information: Slackia exigua DFI.6.114 (GCA_024462625.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024462625.1 | ||
| HOMD Taxon-ID | HMT-0602 | ||
| Species Name (in use by HOMD) | Slackia exigua | ||
| Organism Name (as deposited) | HMT-602 Slackia exigua DFI.6.114 | ||
| Strain or Isolate | DFI.6.114 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia; s__Slackia exigua |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,166,447 (bp) | ||
| GC Percentage | 61.79 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/462/625/GCA_024462625.1_ASM2446262v1 | ||
| CDS | 1789 | ||
| Genes | 1858 | ||
| mRNA | 1858 | ||
| misc RNA | 13 | ||
| rRNA | 5 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.88 % | ||
| CheckM Completeness | 99.55 % | ||
| CheckM Contamination | 1.55 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2446262v1 |
| GenBank Assembly Accession | GCA_024462625.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024462625.1 [NCBI] |
| BioSample | SAMN28944525 [NCBI] |
| BioProject | PRJNA792599 [NCBI] |
| Submitter | University of Chicago |
| Submission Date | 2022-06-09T14:20:06.586 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JANGBW01 |
| NCBI TaxID | 84109 |
| Isolation Source | fecal sample |
| Geo Location | USA:Chicago |
