Genome Meta Information: Schaalia sp. HMT-180 KHUD_008 (GCA_024584435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024584435.1 | ||
| HOMD Taxon-ID | HMT-0180 | ||
| Species Name (in use by HOMD) | Schaalia sp. HMT-180 | ||
| Organism Name (as deposited) | HMT-180 Schaalia sp. HMT-180 KHUD_008 | ||
| Strain or Isolate | KHUD_008 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia sp000185285 |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 14.58 | ||
| Contigs |
|
||
| Total Sequence Length | 2,389,595 (bp) | ||
| GC Percentage | 66.37 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/584/435/GCA_024584435.1_ASM2458443v1 | ||
| CDS | 2057 | ||
| Genes | 2125 | ||
| mRNA | 2125 | ||
| misc RNA | 10 | ||
| rRNA | 9 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 84.22 % | ||
| CheckM Completeness | 89.28 % | ||
| CheckM Contamination | 4.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2458443v1 |
| GenBank Assembly Accession | GCA_024584435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024584435.1 [NCBI] |
| BioSample | SAMN30032671 [NCBI] |
| BioProject | PRJNA863379 [NCBI] |
| Submitter | Kyung Hee University |
| Submission Date | 2022-07-28T22:23:04.117 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1660 |
| Isolation Source | |
| Geo Location | South Korea: Seoul |
