Genome Meta Information: Lactobacillus acidophilus LA-2 (GCA_024665075.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024665075.1 | ||
| HOMD Taxon-ID | HMT-0529 | ||
| Species Name (in use by HOMD) | Lactobacillus acidophilus | ||
| Organism Name (as deposited) | HMT-529 Lactobacillus acidophilus LA-2 | ||
| Strain or Isolate | LA-2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus acidophilus |
||
| Sequencing Technology | Oxford Nanopore MiniION, Illumina MiSeq | ||
| Genome Coverage | 130 | ||
| Contigs |
|
||
| Total Sequence Length | 2,030,963 (bp) | ||
| GC Percentage | 34.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/665/075/GCA_024665075.1_ASM2466507v1 | ||
| CDS | 1897 | ||
| Genes | 2016 | ||
| mRNA | 2016 | ||
| misc RNA | 43 | ||
| rRNA | 15 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.93 % | ||
| CheckM Completeness | 94.79 % | ||
| CheckM Contamination | 0.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2466507v1 |
| GenBank Assembly Accession | GCA_024665075.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024665075.1 [NCBI] |
| BioSample | SAMN29862208 [NCBI] |
| BioProject | PRJNA860779 [NCBI] |
| Submitter | Chr. Hansen A/S |
| Submission Date | 2022-07-21T05:47:03.360 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1579 |
| Isolation Source | |
| Geo Location | not applicable |
