Genome Meta Information: Lacticaseibacillus paracasei VHProbi M56 (GCA_024717335.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024717335.1 | ||
| HOMD Taxon-ID | HMT-0716 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus paracasei | ||
| Organism Name (as deposited) | HMT-716 Lacticaseibacillus paracasei VHProbi M56 | ||
| Strain or Isolate | VHProbi M56 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus paracasei |
||
| Sequencing Technology | Illumina HiSeq; PacBio | ||
| Genome Coverage | 1107.22 | ||
| Contigs |
|
||
| Total Sequence Length | 3,082,467 (bp) | ||
| GC Percentage | 46.37 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/717/335/GCA_024717335.1_ASM2471733v1 | ||
| CDS | 2955 | ||
| Genes | 3064 | ||
| mRNA | 3064 | ||
| misc RNA | 33 | ||
| rRNA | 15 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.63 % | ||
| CheckM Completeness | 92.96 % | ||
| CheckM Contamination | 3.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2471733v1 |
| GenBank Assembly Accession | GCA_024717335.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024717335.1 [NCBI] |
| BioSample | SAMN27162336 [NCBI] |
| BioProject | PRJNA821984 [NCBI] |
| Submitter | Nutrition &Health Technology Center |
| Submission Date | 2022-03-31T23:49:03.133 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1597 |
| Isolation Source | |
| Geo Location | China:Qingdao |
