Genome Meta Information: Phocaeicola vulgatus BFG-429 (GCA_024792005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024792005.1 | ||
| HOMD Taxon-ID | HMT-0978 | ||
| Species Name (in use by HOMD) | Phocaeicola vulgatus | ||
| Organism Name (as deposited) | HMT-978 Phocaeicola vulgatus BFG-429 | ||
| Strain or Isolate | BFG-429 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola vulgatus |
||
| Sequencing Technology | Oxford Nanopore GridION | ||
| Genome Coverage | 64 | ||
| Contigs |
|
||
| Total Sequence Length | 5,062,946 (bp) | ||
| GC Percentage | 42.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/792/005/GCA_024792005.1_ASM2479200v1 | ||
| CDS | 5710 | ||
| Genes | 5837 | ||
| mRNA | 5837 | ||
| misc RNA | 22 | ||
| rRNA | 23 | ||
| tRNA | 81 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.25 % | ||
| CheckM Completeness | 57.49 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2479200v1 |
| GenBank Assembly Accession | GCA_024792005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN30323343 [NCBI] |
| BioProject | PRJNA646575 [NCBI] |
| Submitter | National Institute of Allergy and Infectious Disease |
| Submission Date | 2022-08-15T15:49:06.553 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JANUUA01 |
| NCBI TaxID | 821 |
| Isolation Source | |
| Geo Location | USA: Bethesda |
