Genome Meta Information: Lacticaseibacillus paracasei L1 (GCA_025137495.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025137495.1 | ||
| HOMD Taxon-ID | HMT-0716 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus paracasei | ||
| Organism Name (as deposited) | HMT-716 Lacticaseibacillus paracasei L1 | ||
| Strain or Isolate | L1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus paracasei |
||
| Sequencing Technology | Illumina NovaSeq; PacBio Sequel | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,434,047 (bp) | ||
| GC Percentage | 46.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/137/495/GCA_025137495.1_ASM2513749v1 | ||
| CDS | 3304 | ||
| Genes | 3417 | ||
| mRNA | 3417 | ||
| misc RNA | 36 | ||
| rRNA | 15 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.48 % | ||
| CheckM Completeness | 96.54 % | ||
| CheckM Contamination | 10.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2513749v1 |
| GenBank Assembly Accession | GCA_025137495.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025137495.1 [NCBI] |
| BioSample | SAMN20355457 [NCBI] |
| BioProject | PRJNA749149 [NCBI] |
| Submitter | Jinzhou Medical University |
| Submission Date | 2021-07-23T04:12:05.143 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1597 |
| Isolation Source | Sweet Potato Sour Liquid |
| Geo Location | China:Jinzhou |
