Genome Meta Information: Corynebacterium amycolatum p3-SID879 (GCA_025145255.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025145255.1 | ||
| HOMD Taxon-ID | HMT-0031 | ||
| Species Name (in use by HOMD) | Corynebacterium amycolatum | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum p3-SID879 | ||
| Strain or Isolate | p3-SID879 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium amycolatum |
||
| Sequencing Technology | Illumina NextSeq 550 | ||
| Genome Coverage | 159 | ||
| Contigs |
|
||
| Total Sequence Length | 2,496,688 (bp) | ||
| GC Percentage | 58.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/255/GCA_025145255.1_ASM2514525v1 | ||
| CDS | 2183 | ||
| Genes | 2256 | ||
| mRNA | 2256 | ||
| misc RNA | 15 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.99 % | ||
| CheckM Completeness | 99.4 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2514525v1 |
| GenBank Assembly Accession | GCA_025145255.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025145255.1 [NCBI] |
| BioSample | SAMN25653420 [NCBI] |
| BioProject | PRJNA803478 [NCBI] |
| Submitter | University of Wisconsin - Madison |
| Submission Date | 2022-02-04T14:00:11.440 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JALXLF01 |
| NCBI TaxID | 43765 |
| Isolation Source | Umbilicus swab |
| Geo Location | USA: Wisconsin, Madison |
