Genome Meta Information: Corynebacterium pseudodiphtheriticum p3-SID764 (GCA_025146235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025146235.1 | ||
| HOMD Taxon-ID | HMT-0060 | ||
| Species Name (in use by HOMD) | Corynebacterium pseudodiphtheriticum | ||
| Organism Name (as deposited) | HMT-060 Corynebacterium pseudodiphtheriticum p3-SID764 | ||
| Strain or Isolate | p3-SID764 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium pseudodiphtheriticum |
||
| Sequencing Technology | Illumina NextSeq 550 | ||
| Genome Coverage | 144 | ||
| Contigs |
|
||
| Total Sequence Length | 2,300,099 (bp) | ||
| GC Percentage | 55.3 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/146/235/GCA_025146235.1_ASM2514623v1 | ||
| CDS | 2085 | ||
| Genes | 2142 | ||
| mRNA | 2142 | ||
| misc RNA | 6 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.02 % | ||
| CheckM Completeness | 98.44 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2514623v1 |
| GenBank Assembly Accession | GCA_025146235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025146235.1 [NCBI] |
| BioSample | SAMN25653432 [NCBI] |
| BioProject | PRJNA803478 [NCBI] |
| Submitter | University of Wisconsin - Madison |
| Submission Date | 2022-02-04T14:00:11.600 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JALXMR01 |
| NCBI TaxID | 37637 |
| Isolation Source | Nares swab |
| Geo Location | USA: Wisconsin, Madison |
