Genome Meta Information: Parabacteroides merdae ATCC 43184 (GCA_025151215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025151215.1 | ||
| HOMD Taxon-ID | HMT-0974 | ||
| Species Name (in use by HOMD) | Parabacteroides merdae | ||
| Organism Name (as deposited) | HMT-974 Parabacteroides merdae ATCC 43184 | ||
| Strain or Isolate | ATCC 43184 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides; s__Parabacteroides merdae |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 4,377,447 (bp) | ||
| GC Percentage | 45.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/151/215/GCA_025151215.1_ASM2515121v1 | ||
| CDS | 3619 | ||
| Genes | 3726 | ||
| mRNA | 3726 | ||
| misc RNA | 14 | ||
| rRNA | 16 | ||
| tRNA | 77 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 97.84 % | ||
| CheckM Contamination | 3.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2515121v1 |
| GenBank Assembly Accession | GCA_025151215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025151215.1 [NCBI] |
| BioSample | SAMN20222701 [NCBI] |
| BioProject | PRJNA746600 [NCBI] |
| Submitter | Stanford University |
| Submission Date | 2021-07-14T17:26:20.190 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 411477 |
| Isolation Source | |
| Geo Location | not applicable |
