Genome Meta Information: Ligilactobacillus salivarius H1 (GCA_025398675.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025398675.1 | ||
| HOMD Taxon-ID | HMT-0756 | ||
| Species Name (in use by HOMD) | Ligilactobacillus salivarius | ||
| Organism Name (as deposited) | HMT-756 Ligilactobacillus salivarius H1 | ||
| Strain or Isolate | H1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus; s__Ligilactobacillus salivarius |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 105.02 | ||
| Contigs |
|
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| Total Sequence Length | 2,578,608 (bp) | ||
| GC Percentage | 32.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/398/675/GCA_025398675.1_ASM2539867v1 | ||
| CDS | 2539 | ||
| Genes | 2677 | ||
| mRNA | 2677 | ||
| misc RNA | 37 | ||
| rRNA | 22 | ||
| tRNA | 78 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.08 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2539867v1 |
| GenBank Assembly Accession | GCA_025398675.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN30578425 [NCBI] |
| BioProject | PRJNA874879 [NCBI] |
| Submitter | Jiangxi Agricultural University |
| Submission Date | 2022-08-30T05:51:03.303 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1624 |
| Isolation Source | |
| Geo Location | China:Jiangxi NanChang |
