Genome Meta Information: Lactiplantibacillus pentosus 68-1 (GCA_025398935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025398935.1 | ||
| HOMD Taxon-ID | HMT-0883 | ||
| Species Name (in use by HOMD) | Lactiplantibacillus pentosus | ||
| Organism Name (as deposited) | HMT-883 Lactiplantibacillus pentosus 68-1 | ||
| Strain or Isolate | 68-1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus; s__Lactiplantibacillus pentosus |
||
| Sequencing Technology | Oxford Nanopore PromethION; Illumina NovaSeq | ||
| Genome Coverage | 292 | ||
| Contigs |
|
||
| Total Sequence Length | 3,583,752 (bp) | ||
| GC Percentage | 46.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/398/935/GCA_025398935.1_ASM2539893v1 | ||
| CDS | 3181 | ||
| Genes | 3305 | ||
| mRNA | 3305 | ||
| misc RNA | 43 | ||
| rRNA | 16 | ||
| tRNA | 64 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.9 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 1.88 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2539893v1 |
| GenBank Assembly Accession | GCA_025398935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025398935.1 [NCBI] |
| BioSample | SAMN30841943 [NCBI] |
| BioProject | PRJNA880475 [NCBI] |
| Submitter | Shaanxi Institute of Microbiology |
| Submission Date | 2022-09-14T04:04:03.103 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1589 |
| Isolation Source | Jiangshui |
| Geo Location | China: Xian |
